๐ Complete Urinalysis Modules
๐งช Dipstick Analysis
Comprehensive dipstick parameters and limitations
๐ฌ Ancillary Urine Testing
Microscopy, FeNa analysis, and urine eosinophil testing
๐ฆ UTI Assessment
UTI detection and evidence-based evaluation
๐ฌ MICROSCOPY FIRST: The Gold Standard That Can't Be Replaced
๐ฏ Nephrology Perspective
The dipstick is a screening tool. The microscopy is the diagnosis.
In nephrology, we don't treat dipstick results - we treat what we see under the microscope. The urinalysis without microscopy is like an EKG without the actual tracing.
๐ฌ What Microscopy Reveals:
- Active urinary sediment: RBC casts = glomerulonephritis
- Infection vs inflammation: Bacteria vs sterile pyuria
- Acute tubular necrosis: Muddy brown granular casts
- Crystalluria: Drug-induced, metabolic disorders
- Contamination assessment: Squamous epithelial cells
๐ซ What Dipstick Misses:
- Cast morphology: Type determines etiology
- RBC morphology: Dysmorphic vs isomorphic
- Crystal identification: Specific stone risk
- Parasite detection: Schistosoma, others
- Contamination degree: Specimen validity
๐ Urinalysis Microscopy vs FeNa: Diagnostic Priorities

Key Teaching Points from This Graphic:
๐ฌ Microscopy Priority
Urinalysis microscopy provides immediate, definitive diagnostic information that should be obtained BEFORE calculating FeNa in AKI evaluation.
โ๏ธ FeNa Limitations
FeNa can be misleading in multiple clinical scenarios and should never replace careful microscopic examination of the urinalysis.
๐ฏ Clinical Integration
The combination of microscopy findings with clinical context provides superior diagnostic accuracy compared to FeNa alone.
๐ Systematic Urinalysis Interpretation
๐ The Nephrology-Focused Approach
Squamous epithelial cells, mixed bacteria, collection method
RBCs, WBCs, casts, crystals, bacteria - actual pathology
Use chemistry to support, not replace, microscopy findings
Symptoms, physical exam, labs, imaging in context
Culture, stone analysis, autoimmune workup as indicated
๐ฌ Critical Microscopy Findings
๐ด Red Blood Cells
Morphology Matters Most
- Dysmorphic RBCs (>80%): Glomerular disease
- Isomorphic RBCs: Lower urinary tract source
- RBC casts: URGENT - active glomerulonephritis (always contain dysmorphic RBCs)
- Mixed with proteinuria: Nephritis syndrome
- Phase contrast: Best for dysmorphism detection
โช White Blood Cells
Context Determines Significance
- With bacteria: Likely infection
- Sterile pyuria: TB, stones, interstitial nephritis
- WBC casts: Pyelonephritis or acute interstitial nephritis
- Eosinophils: POOR test for AIN (sensitivity 30%, specificity 68%, PPV 15%)
- >50/hpf: Active inflammation/infection
๐ Casts
The Kidney's Fingerprint
- RBC casts: Glomerulonephritis (URGENT)
- WBC casts: Pyelonephritis, AIN
- Granular casts: ATN, chronic disease
- Waxy casts: Chronic kidney disease
- Fatty casts: Nephrotic syndrome
- Hyaline casts: Normal (if few)
๐ Crystals
pH and Pathology Clues
- Uric acid: Acidic urine, tumor lysis, gout
- Calcium oxalate: Hyperoxaluria, ethylene glycol
- Calcium phosphate: Alkaline urine, hypercalciuria
- Struvite: Infection with urease producers
- Cystine: Cystinuria (genetic disorder)
- Drug crystals: Sulfa, acyclovir, indinavir
๐ฆ CONTAMINATION: The Near-Olympic Sport of Clean Collection
๐ The Athletic Challenge of Female Clean Catch
Obtaining a truly uncontaminated urine specimen from a female patient without touching vaginal surfaces requires the coordination, flexibility, and technique of an Olympic gymnast.
EASY
Male clean catch
Generally well-toleratedMODERATE
Female clean catch, Men with BPH
BPH patients may become "dunkers" with epithelial cell contaminationHARD
Elderly female
High contamination riskOLYMPIC LEVEL
Obese, elderly female with limited mobility
Frequently requires alternative collection๐งฌ Vaginal Flora Contamination
The Usual Suspects:
- Lactobacillus species (most common)
- Enterococcus species
- Coagulase-negative Staphylococcus
- ฮฑ-hemolytic Streptococcus
- Corynebacterium species
- Mixed gram-positive flora
Red Flag: >10โต CFU/mL of "normal flora" = significant contamination
๐ Contamination Indicators
Microscopy Signs:
- >10 squamous epithelial cells/hpf
- Mixed bacterial morphology
- Absence of WBCs despite bacteria
- Trichomonas organisms
- Yeast/pseudohyphae
- Mucus threads
Culture Signs:
- โฅ3 different organisms
- Lactobacillus as predominant organism
- Low CFU counts of potential pathogens
๐ฏ When to Abandon Clean Catch
Consider straight catheterization when:
Sepsis, pyelonephritis, complicated UTI requiring immediate definitive diagnosis
Obesity, limited mobility, cognitive impairment, recurrent contamination
>2 contaminated specimens, inconclusive results, diagnostic uncertainty
๐ฏ Mastering the Clean Catch: Practical Guidelines
๐จ Male Clean Catch
- Retract foreskin (if uncircumcised)
- Clean glans with antiseptic wipe
- Discard first 20-30mL of urine
- Collect midstream in sterile container
- Avoid touching container rim or inside
๐ฉ Female Clean Catch
- Separate labia with non-dominant hand
- Clean urethral area front-to-back
- Maintain labial separation throughout
- Start urination, then collect midstream
- Avoid touching container to genital area
๐ The "Olympic Level" Factors
Limited reach and visual access to urethral area
Reduced hand dexterity and grip strength
Difficulty following multi-step instructions
Inability to pause midstream collection
๐ก Alternative Collection Methods
๐ฉน Straight Catheterization
When: Repeated contamination, clinical urgency, inability to provide clean catch
Advantage: Definitive, uncontaminated specimen
Risk: 1-2% UTI risk from procedure
๐งช Suprapubic Aspiration
When: Neonates, research protocols, medico-legal cases
Advantage: 100% sterile specimen
Limitation: Invasive, requires full bladder
โ ๏ธ Common Pitfalls in Urinalysis Interpretation
๐ซ Diagnostic Errors
- Dipstick-only diagnosis: Missing casts and morphology
- Ignoring contamination: Treating normal flora as pathogens
- FeNa over-reliance: Missing glomerular disease
- Delayed microscopy: Cells deteriorate in old specimens
- Context ignorance: Not considering clinical picture
- Urine eosinophil reliance: Poor test for AIN (30% sensitivity, 68% specificity)
โฐ Timing Issues
- Refrigerated delay: Crystal precipitation artifacts
- Room temperature storage: Bacterial overgrowth
- Weekend delays: Deteriorated cellular elements
- First morning void: Concentrated, may show artifacts
- Post-exercise: Transient proteinuria and hematuria
- Nitrite timing: <4 hours bladder dwell = false negative
โ Quality Assurance
- Fresh specimens: <2 hours old for optimal microscopy
- Adequate volume: 10-15 mL minimum for proper testing
- Proper containers: Sterile for culture, clean for routine
- Transport conditions: Room temperature or refrigerated
- Repeat if contaminated: Don't force interpretation
- Collection timing: Consider nitrite requirements
๐จ Critical Red Flags in UTI Assessment
๐ฆ Complicated UTI Indicators
- WBC casts (pyelonephritis)
- AKI with UTI symptoms
- Persistent fever despite treatment
- Recurrent infections in males
- Unusual organisms (Pseudomonas)
โ ๏ธ Specimen Quality Issues
- >10 squamous epithelial cells/hpf
- Mixed bacterial morphologies
- Low bacterial count with symptoms
- Lactobacillus predominance
- Trichomonas or yeast present
๐ฏ Management Implications
- Recollect contaminated specimens
- Consider catheterization if urgent
- Blood cultures for systemic symptoms
- Imaging for complicated UTI
- Nephrology consult for AKI
๐ฏ Key Learning Points: Urinalysis Interpretation
๐ฌ Microscopy Priority
- Microscopy is diagnostic, dipstick is screening
- RBC casts = urgent glomerulonephritis
- Dysmorphic RBCs indicate glomerular disease
- Fresh specimens (<2 hours) are critical
๐ FeNa vs Microscopy
- Microscopy findings should drive decisions
- FeNa misleading in multiple scenarios
- Clinical context essential for interpretation
- Pathology matters more than physiology
๐ฆ Contamination Awareness
- Female clean catch is "Olympic-level" difficult
- >10 squamous cells/hpf = contamination
- Consider catheterization when clinically urgent
- Vaginal flora can mimic UTI pathogens
๐งช Collection Mastery
- Proper technique prevents diagnostic errors
- Patient factors affect collection success
- Alternative methods when clean catch fails
- Quality assessment before interpretation
โฐ Dipstick Timing Mastery
- Nitrites require โฅ4 hours bladder dwell time
- First morning void optimal for nitrite detection
- Frequent urination causes false negative nitrites
- Timing affects multiple dipstick parameters